STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE_04891TRAP transporter DctQ-like membrane protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component. (166 aa)    
Predicted Functional Partners:
AJE_04886
TRAP transporter DctM-like subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 0.998
AJE_04896
TRAP transporter solute receptor, DctP family protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
 
 0.994
AJE_04881
COG1414 Transcriptional regulator.
 
     0.793
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.713
AJE_04876
COG1609 Transcriptional regulators.
       0.699
AJE_04871
Glycoside hydrolase family 28 domain-containing protein; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.554
AJE_04906
2-deoxy-D-gluconate 3-dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.537
AJE_01676
COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
    
  0.505
AJE_04260
COG0642 Signal transduction histidine kinase.
    
  0.505
AJE_13215
COG0642 Signal transduction histidine kinase.
    
  0.505
Your Current Organism:
Alishewanella jeotgali
NCBI taxonomy Id: 1129374
Other names: A. jeotgali KCTC 22429, Alishewanella jeotgali KCTC 22429, Alishewanella jeotgali MS1, Alishewanella jeotgali str. KCTC 22429, Alishewanella jeotgali strain KCTC 22429, Alishewanella sp. MS1
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