STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GPLA_0021Amino acid ABC transporter periplasmic protein. (274 aa)    
Predicted Functional Partners:
GPLA_4412
PAS/PAC sensor hybrid histidine kinase.
    
 0.796
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
       0.793
GPLA_1538
Periplasmic sensor hybrid histidine kinase.
   
 0.769
GPLA_3850
Extracellular solute-binding protein.
  
     0.738
GPLA_4626
Multi-sensor hybrid histidine kinase.
   
 0.719
GPLA_1685
HD-GYP domain protein.
  
 
  0.697
GPLA_1385
Signal transduction histidine kinase.
  
  
  0.682
GPLA_4516
ABC-type amino acid transport/signal transduction system, periplasmic component/domain.
  
     0.682
GPLA_2015
Signal transduction histidine kinase.
  
  
  0.680
GPLA_1068
Extracellular solute-binding protein.
  
     0.667
Your Current Organism:
Paraglaciecola polaris
NCBI taxonomy Id: 1129793
Other names: Glaciecola polaris LMG 21857, Glaciecola polaris str. LMG 21857, Glaciecola polaris strain LMG 21857, P. polaris LMG 21857, Paraglaciecola polaris LMG 21857
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.