STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJT49676.1Macro domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)    
Predicted Functional Partners:
AJT51390.1
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.708
cmk
Cytidylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.701
AJT49672.1
3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA glycosylase MPG family.
       0.522
AJT51496.1
Recombinase RarA; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.514
AJT49674.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
AJT49673.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
AJT49675.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
AJT50548.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.485
AJT51336.1
tryptophan--tRNA ligase; Catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
      0.484
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
    0.455
Your Current Organism:
Lactobacillus mucosae
NCBI taxonomy Id: 1130798
Other names: L. mucosae LM1, Lactobacillus mucosae LM1, Lactobacillus mucosae str. LM1, Lactobacillus mucosae strain LM1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.