STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV04171.1EAL domain/GGDEF domain protein. (191 aa)    
Predicted Functional Partners:
AFV05464.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s).
 
 
 0.929
AFV05168.1
PAS domain S-box/diguanylate cyclase (GGDEF) domain protein.
 
 
 0.910
AFV06005.1
GGDEF domain protein.
 
 0.897
AFV04750.1
Sensor protein barA.
 
  
 0.897
AFV04706.1
Sensory box protein.
 
 
 0.879
AFV05465.1
Diguanylate cyclase with PAS/PAC sensor.
  
 
 0.857
AFV05178.1
Hypothetical protein.
 
  
 0.833
AFV06766.1
GGDEF protein.
 
  
 0.833
AFV04458.1
GGDEF domain/HAMP domain protein.
 
  
 0.832
AFV05079.1
Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF).
 
  
 0.829
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.