STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVFADipicolinate synthase subunit A. (315 aa)    
Predicted Functional Partners:
spoVFB
Dipicolinate synthase subunit B.
 
  
 0.990
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
       0.701
AFV04976.1
Putative sporulation protein YtaF; Probably functions as a manganese efflux pump.
  
     0.681
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.679
spoVAF
Stage V sporulation protein AF (SpoVAF).
  
     0.601
spoVT
Stage V sporulation protein T, AbrB family transcriptional regulator (SpoVT).
  
     0.560
AFV06071.1
Sporulation protein, YlmC/YmxH family.
       0.554
mntP
Hypothetical protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family.
  
     0.553
dnaD
DNA replication protein dnaD.
  
     0.544
AFV06066.1
Aspartokinase; Belongs to the aspartokinase family.
       0.542
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.