STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV06526.1ABC transporter, ATP-binding protein. (293 aa)    
Predicted Functional Partners:
AFV06528.1
ABC transporter, permease protein.
 
 
 0.958
AFV06527.1
ABC transporter, permease protein, putative.
 
  
 0.956
AFV04268.1
ABC-type multidrug transport system, permease component.
 
    0.925
AFV04852.1
ABC-type antimicrobial peptide transport system, ATPase component.
 
    
0.835
AFV04860.1
Hypothetical protein.
 
   0.653
AFV05866.1
ABC transporter, permease protein.
   
 
 0.501
yfiN
ABC-type multidrug transport system, permease component.
 
  
 0.428
yfiM
Putative cytolysin ABC transporter precursor.
 
    0.422
AFV05228.1
ABC transporter, permease protein.
    0.410
AFV04727.1
Lipid A export ATP-binding/permease protein MsbA.
  
 
0.403
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.