STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV06576.1Stage II sporulation protein P. (322 aa)    
Predicted Functional Partners:
spoIIE
Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE).
  
   
 0.889
AFV06868.1
Stage III sporulation protein D.
  
  
 0.872
AFV05047.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
   
 0.863
AFV06659.1
Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR).
  
   
 0.863
AFV06558.1
Putative stage IV sporulation YqfD.
 
   
 0.858
AFV04505.1
Stage III sporulation protein AA.
  
   
 0.858
AFV04534.1
Stage IV sporulation protein B.
  
   
 0.835
AFV04508.1
Stage III sporulation protein AD.
  
   
 0.825
AFV04509.1
Stage III sporulation protein AE.
  
   
 0.816
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.808
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
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