STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV06625.1Response regulator receiver modulated diguanylate cyclase. (299 aa)    
Predicted Functional Partners:
AFV04750.1
Sensor protein barA.
 
0.998
AFV06329.1
Sensory box histidine kinase/response regulator.
 
0.984
AFV06435.1
Two-component hybrid histidine kinase.
 
0.979
AFV05782.1
HD-GYP domain protein.
 
   
 0.946
AFV06446.1
Sensor histidine kinase.
 
 0.937
AFV06734.1
Multi-sensor hybrid histidine kinase.
   
 0.931
AFV06773.1
Response regulator receiver modulated metal dependent phosphohydrolase.
  
 0.912
AFV06205.1
Hypothetical protein.
 
   
 0.888
AFV06746.1
Periplasmic sensor signal transduction histidine kinase.
 
 0.881
AFV05168.1
PAS domain S-box/diguanylate cyclase (GGDEF) domain protein.
 
0.854
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.