STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV06874.1Retron-type reverse transcriptase. (216 aa)    
Predicted Functional Partners:
AFV06878.1
Retron-type reverse transcriptase.
     0.982
AFV05262.1
Retron-type reverse transcriptase.
 
     0.829
AFV06819.1
RNA-directed DNA polymerase (Reverse transcriptase).
  
     0.765
AFV06875.1
Putative integrase/recombinase.
  
    0.503
AFV06876.1
Putative integrase/recombinase.
  
    0.503
AFV06877.1
Integrase/recombinase, putative.
  
    0.503
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.