STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DCF50_p38DNA methylase. (2237 aa)    
Predicted Functional Partners:
DCF50_p39
Hypothetical protein.
 
     0.948
DCF50_p37
Hypothetical protein.
 
     0.920
AFV05414.1
Type I restriction-modification system, restriction subunit R; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.918
DCF50_p30
FIG00514444: hypothetical protein.
 
     0.914
DCF50_p32
Bacteriocin-like protein.
 
     0.913
DCF50_p31
Hypothetical protein.
 
     0.886
DCF50_p36
DNA repair protein RadC; Belongs to the UPF0758 family.
     0.884
DCF50_p28
TrsE-like protein.
 
     0.867
topB
DNA topoisomerase III.
 
     0.834
AFV05278.1
Restriction modification system DNA specificity domain protein.
  
 
 0.810
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.