STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFV04514.1Hypothetical protein. (89 aa)    
Predicted Functional Partners:
AFV04513.1
Alkaline shock protein.
       0.780
nusB
Transcription termination protein NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.777
AFV04516.1
Endopeptidase.
       0.777
AFV04511.1
Stage III sporulation protein AG.
       0.599
AFV04510.1
Stage III sporulation protein AF.
       0.582
AFV04509.1
Stage III sporulation protein AE.
       0.564
AFV04508.1
Stage III sporulation protein AD.
       0.554
AFV04507.1
Stage III sporulation protein AC.
       0.544
AFV04506.1
Stage III sporulation protein AB.
       0.522
AFV04512.1
Hypothetical protein.
       0.501
Your Current Organism:
Dehalobacter sp. CF
NCBI taxonomy Id: 1131462
Other names: D. sp. CF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.