STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAZO_00305Cobalamin B12-binding domain-containing protein; COG1032 Fe-S oxidoreductase. (585 aa)    
Predicted Functional Partners:
BAZO_08681
Hypothetical protein.
  
 
 0.930
BAZO_18271
4-vinyl reductase 4VR; COG1719 Predicted hydrocarbon binding protein (contains V4R domain).
  
 
 0.930
BAZO_11919
16S rRNA m(2)G 1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC.
   
 
 0.638
BAZO_00500
Methyltransferase; COG0500 SAM-dependent methyltransferases.
  
 
 0.589
BAZO_14424
COG0500 SAM-dependent methyltransferases.
  
 
 0.589
BAZO_00310
COG0840 Methyl-accepting chemotaxis protein.
       0.543
BAZO_01062
COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases.
 
  
0.541
BAZO_14484
Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.505
BAZO_00315
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; COG2202 FOG: PAS/PAC domain.
       0.473
BAZO_10353
Fumarate hydratase class I, aerobic; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
 
     0.471
Your Current Organism:
Bacillus azotoformans
NCBI taxonomy Id: 1131731
Other names: B. azotoformans LMG 9581, Bacillus azotoformans ATCC 29788, Bacillus azotoformans IFO 15712, Bacillus azotoformans LMG 9581, Bacillus azotoformans NBRC 15712, Bacillus azotoformans str. LMG 9581, Bacillus azotoformans strain LMG 9581
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