STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ61965.1COG3906 Uncharacterized protein conserved in bacteria; Belongs to the UPF0473 family. (98 aa)    
Predicted Functional Partners:
EHQ61964.1
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.956
EHQ61963.1
COG4472 Uncharacterized protein conserved in bacteria; Belongs to the UPF0297 family.
  
  
 0.940
EHQ61966.1
Hypothetical protein.
       0.821
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
       0.739
EHQ61968.1
Peptidase u32; COG0826 Collagenase and related proteases.
       0.726
EHQ61969.1
Peptidase u32; COG0826 Collagenase and related proteases.
       0.716
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.676
EHQ63252.1
COG4470 Uncharacterized protein conserved in bacteria.
  
     0.655
EHQ58962.1
COG4471 Uncharacterized protein conserved in bacteria.
  
     0.622
EHQ62910.1
COG3611 Replication initiation/membrane attachment protein.
  
     0.572
Your Current Organism:
Paenibacillus dendritiformis
NCBI taxonomy Id: 1131935
Other names: P. dendritiformis C454, Paenibacillus dendritiformis C454, Paenibacillus dendritiformis str. C454, Paenibacillus dendritiformis strain C454
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.