AC579_1421 protein (Pseudocercospora musae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AC579_1421

Uncharacterized protein. (297 aa)

Predicted Functional Partners:

AC579_1131

0.996

AC579_794

0.938

AC579_8183

0.880

AC579_9799

0.856

AC579_8449

0.850

AC579_8735

0.778

AC579_9871

0.763

AC579_1219

0.762

AC579_10190

0.762

AC579_427

0.762

Your Current Organism:

Pseudocercospora musae

NCBI taxonomy Id: 113226
Other names: Mycosphaerella musicola, Mycosphaerella musicola R. Leach, P. musae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AC579_10190	AC579_1131	A0A139I2V6	A0A139I8P2	Ribosomal_L28e domain-containing protein.	SRP54_N domain-containing protein.	0.762
AC579_10190	AC579_1219	A0A139I2V6	A0A139HZR4	Ribosomal_L28e domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
AC579_10190	AC579_1421	A0A139I2V6	A0A139IMD0	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.762
AC579_10190	AC579_427	A0A139I2V6	A0A139I391	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.999
AC579_10190	AC579_794	A0A139I2V6	A0A139IHL1	Ribosomal_L28e domain-containing protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.789
AC579_10190	AC579_8183	A0A139I2V6	A0A139IUK5	Ribosomal_L28e domain-containing protein.	Uncharacterized protein.	0.775
AC579_10190	AC579_8449	A0A139I2V6	A0A139GVY4	Ribosomal_L28e domain-containing protein.	SRP9-21 domain-containing protein.	0.811
AC579_10190	AC579_8735	A0A139I2V6	A0A139IW84	Ribosomal_L28e domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.999
AC579_10190	AC579_9871	A0A139I2V6	A0A139IA49	Ribosomal_L28e domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
AC579_1131	AC579_10190	A0A139I8P2	A0A139I2V6	SRP54_N domain-containing protein.	Ribosomal_L28e domain-containing protein.	0.762
AC579_1131	AC579_1219	A0A139I8P2	A0A139HZR4	SRP54_N domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.785
AC579_1131	AC579_1421	A0A139I8P2	A0A139IMD0	SRP54_N domain-containing protein.	Uncharacterized protein.	0.996
AC579_1131	AC579_427	A0A139I8P2	A0A139I391	SRP54_N domain-containing protein.	Uncharacterized protein.	0.762
AC579_1131	AC579_794	A0A139I8P2	A0A139IHL1	SRP54_N domain-containing protein.	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.	0.997
AC579_1131	AC579_8183	A0A139I8P2	A0A139IUK5	SRP54_N domain-containing protein.	Uncharacterized protein.	0.881
AC579_1131	AC579_8449	A0A139I8P2	A0A139GVY4	SRP54_N domain-containing protein.	SRP9-21 domain-containing protein.	0.885
AC579_1131	AC579_8735	A0A139I8P2	A0A139IW84	SRP54_N domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.957
AC579_1131	AC579_9871	A0A139I8P2	A0A139IA49	SRP54_N domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.762
AC579_1219	AC579_10190	A0A139HZR4	A0A139I2V6	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	Ribosomal_L28e domain-containing protein.	0.999
AC579_1219	AC579_1131	A0A139HZR4	A0A139I8P2	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	SRP54_N domain-containing protein.	0.785