STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000372865_03439Unannotated protein. (490 aa)    
Predicted Functional Partners:
GCA_000372865_03438
Unannotated protein.
       0.787
GCA_000372865_03440
Unannotated protein.
       0.499
GCA_000372865_01898
Unannotated protein.
    
 0.408
Your Current Organism:
Methylosarcina fibrata
NCBI taxonomy Id: 1132443
Other names: M. fibrata AML-C10, Methylosarcina fibrata AML-C10, Methylosarcina fibrata str. AML-C10, Methylosarcina fibrata strain AML-C10, type I methanotroph AML-C10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.