STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ku-2ATP-dependent DNA helicase; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (276 aa)    
Predicted Functional Partners:
EJT06359.1
DNA polymerase LigD, ligase domain protein; COG1793 ATP-dependent DNA ligase.
 
  
 0.986
EJT06539.1
DNA polymerase LigD, polymerase domain protein; COG3285 Predicted eukaryotic-type DNA primase.
 
  
 0.943
ligD
COG1793 ATP-dependent DNA ligase.
 
  
 0.943
ku
ATP-dependent DNA helicase; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
  
 
0.920
EJT03062.1
Hypothetical protein.
 
    0.535
EJT05926.1
Hypothetical protein.
 
    0.484
EJT06356.1
Hypothetical protein.
       0.475
EJT06538.1
COG3569 Topoisomerase IB.
 
    0.463
EJT06680.1
COG1793 ATP-dependent DNA ligase.
 
  
 0.427
Your Current Organism:
Rhizobium sp. CCGE510
NCBI taxonomy Id: 1132836
Other names: R. sp. CCGE 510, Rhizobium sp. CCGE 510
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.