STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJT00817.1Conjugal transfer protein TrbD; COG5268 Type IV secretory pathway, TrbD component. (99 aa)    
Predicted Functional Partners:
EJT00816.1
Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).
 
  
 0.979
EJT00791.1
Conjugal transfer protein TrbG; COG3504 Type IV secretory pathway, VirB9 components.
 
  
 0.931
EJT00815.1
Conjugal transfer protein TrbB; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.928
EJT00765.1
Conjugal transfer protein TrbB; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.645
EJT06213.1
Type II secretion system protein E; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
 0.442
EJT00780.1
Putative helicase; COG0018 Arginyl-tRNA synthetase.
  
  
 0.423
EJT00776.1
Putative helicase.
  
  
 0.423
EJT00770.1
Putative helicase.
  
  
 0.423
Your Current Organism:
Rhizobium sp. CCGE510
NCBI taxonomy Id: 1132836
Other names: R. sp. CCGE 510, Rhizobium sp. CCGE 510
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.