STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000332235_01647Unannotated protein. (141 aa)    
Predicted Functional Partners:
GCA_000332235_01646
Unannotated protein.
 
     0.732
GCA_000332235_00524
Unannotated protein.
  
  
 0.675
GCA_000332235_01648
Unannotated protein.
       0.572
GCA_000332235_02680
Unannotated protein.
  
    0.458
GCA_000332235_03469
Unannotated protein.
  
  
 0.453
GCA_000332235_00178
Unannotated protein.
  
     0.447
GCA_000332235_01181
Unannotated protein.
  
  
 0.444
GCA_000332235_02412
Unannotated protein.
  
     0.427
GCA_000332235_01649
Unannotated protein.
       0.413
GCA_000332235_03727
Unannotated protein.
   
    0.407
Your Current Organism:
Geminocystis herdmanii
NCBI taxonomy Id: 113355
Other names: G. herdmanii PCC 6308, Geminocystis herdmanii PCC 6308, Gloeocapsa alpicola CALU 743, Synechocystis sp. ATCC 27150, Synechocystis sp. ATCC 27267, Synechocystis sp. PCC 6308
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.