STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM88920.1Hypothetical protein. (266 aa)    
Predicted Functional Partners:
KRM88921.1
Hypothetical protein.
       0.773
KRM88922.1
PTS system mannose fructose sorbose family IID component.
    
  0.692
KRM86301.1
HAD superfamily hydrolase.
  
 
  0.608
KRM88925.1
Phosphotransferase system mannose fructose-specific component iia.
    
  0.513
KRM89098.1
HAD superfamily hydrolase.
  
 
 
0.504
KRM88923.1
Phosphotransferase system, mannose fructose N-acetylgalactosamine-specific component IIC.
    
  0.501
KRM88924.1
PTS system, mannose-specific IIB component.
    
  0.470
KRM88919.1
Hypothetical protein.
       0.460
KRM85021.1
PTS family mannose porter, IIAB component.
    
  0.451
Your Current Organism:
Lactobacillus vini
NCBI taxonomy Id: 1133569
Other names: L. vini DSM 20605, Lactobacillus sp. CECT 5924, Lactobacillus sp. DSM 20605, Lactobacillus vini CECT 5924, Lactobacillus vini DSM 20605, Lactobacillus vini str. DSM 20605, Lactobacillus vini strain DSM 20605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.