STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM89589.1Peptide deacylase. (547 aa)    
Predicted Functional Partners:
KRM89590.1
Amidinotransferase family protein.
 
    0.938
KRM89591.1
ABC transporter substrate-binding protein.
 
     0.808
KRM89594.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.764
KRM89592.1
Amino acid ABC transporter permease.
       0.618
hisC-2
Histidinol-phosphate transaminase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
     0.599
KRM89593.1
ABC transporter ATP-binding protein.
       0.590
KRM89158.1
RpiR family transcriptional regulator.
  
     0.568
KRM89174.1
Hypothetical protein.
  
     0.494
KRM89159.1
Hypothetical protein.
  
     0.466
Your Current Organism:
Lactobacillus vini
NCBI taxonomy Id: 1133569
Other names: L. vini DSM 20605, Lactobacillus sp. CECT 5924, Lactobacillus sp. DSM 20605, Lactobacillus vini CECT 5924, Lactobacillus vini DSM 20605, Lactobacillus vini str. DSM 20605, Lactobacillus vini strain DSM 20605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.