STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM86654.1Transcriptional regulator RpiR family protein. (287 aa)    
Predicted Functional Partners:
KRM89318.1
Trehalose PTS II ABC.
 
 
 0.918
KRM89087.1
Protein-n(pi)-phosphohistidine--sugar phosphotransferase.
  
 
 0.902
KRM89505.1
PTS family porter.
  
 
 0.902
KRM85211.1
Hypothetical protein.
  
 
 0.902
KRM89317.1
PTS system, trehalose-specific IIBC component.
  
 
 0.902
murQ
N-acetylmuramic acid-6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.704
KRM89134.1
PTS system sucrose-specific transporter subunit EIIBC.
  
 
 0.672
KRM86652.1
Hypothetical protein.
       0.436
KRM86653.1
Hypothetical protein.
       0.436
KRM86656.1
N-acetylglucosamine kinase.
 
     0.400
Your Current Organism:
Lactobacillus vini
NCBI taxonomy Id: 1133569
Other names: L. vini DSM 20605, Lactobacillus sp. CECT 5924, Lactobacillus sp. DSM 20605, Lactobacillus vini CECT 5924, Lactobacillus vini DSM 20605, Lactobacillus vini str. DSM 20605, Lactobacillus vini strain DSM 20605
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.