STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRM86529.1Dna repair protein; May be involved in recombinational repair of damaged DNA. (560 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
   
 0.863
argR-3
Arginine catabolic regulator; Regulates arginine biosynthesis genes.
  
  
 0.848
KRM86527.1
Hemolysin.
 
  
 0.781
xseB
Hypothetical protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
     
 0.757
KRM86526.1
Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
     
 0.727
cinA
Competence damage-inducible protein A; Belongs to the CinA family.
 
   
 0.724
KRM84243.1
Hypothetical protein.
  
  
 0.723
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
  
 0.723
KRM89251.1
single-stranded-DNA-specific exonuclease.
  
  
 0.716
folD
Methylenetetrahydrofolate dehydrogenase (nadp+) methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.704
Your Current Organism:
Lactobacillus vini
NCBI taxonomy Id: 1133569
Other names: L. vini DSM 20605, Lactobacillus sp. CECT 5924, Lactobacillus sp. DSM 20605, Lactobacillus vini CECT 5924, Lactobacillus vini DSM 20605, Lactobacillus vini str. DSM 20605, Lactobacillus vini strain DSM 20605
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.