STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFU00842.1FAD-dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating). (407 aa)    
Predicted Functional Partners:
AFU00839.1
Putative FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
 0.973
AFU00840.1
Hypothetical protein; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
 
  
 0.957
AFU00838.1
COG3938 Proline racemase; Belongs to the proline racemase family.
 
  
 0.955
AFU00844.1
COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family.
 
   
 0.936
AFU00843.1
COG1012 NAD-dependent aldehyde dehydrogenases.
 
  
 0.892
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
 
  
 0.841
AFU00836.1
GntR family transcriptional regulator protein; COG1802 Transcriptional regulators.
  
 0.782
AFU00841.1
Hypothetical protein.
       0.773
AFU00837.1
Hypothetical protein; COG0531 Amino acid transporters.
  
  
 0.667
AFU01638.1
FAD dependent oxidoreductase; COG0665 Glycine/D-amino acid oxidases (deaminating); Belongs to the GcvT family.
 
 
0.520
Your Current Organism:
Nocardia brasiliensis
NCBI taxonomy Id: 1133849
Other names: N. brasiliensis ATCC 700358, Nocardia brasiliensis ATCC 700358, Nocardia brasiliensis HUJEG-1, Nocardia brasiliensis str. ATCC 700358, Nocardia brasiliensis strain ATCC 700358
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