Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHJG_2640 | SHJG_2642 | SHJG_2640 | SHJG_2642 | Reductase. | MutT-like protein. | 0.783 |
SHJG_2640 | SHJG_2643 | SHJG_2640 | SHJG_2643 | Reductase. | Putative aldehyde dehydrogenase. | 0.746 |
SHJG_2640 | lig | SHJG_2640 | SHJG_2641 | Reductase. | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.787 |
SHJG_2642 | SHJG_2640 | SHJG_2642 | SHJG_2640 | MutT-like protein. | Reductase. | 0.783 |
SHJG_2642 | SHJG_2643 | SHJG_2642 | SHJG_2643 | MutT-like protein. | Putative aldehyde dehydrogenase. | 0.782 |
SHJG_2642 | lig | SHJG_2642 | SHJG_2641 | MutT-like protein. | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.915 |
SHJG_2643 | SHJG_2640 | SHJG_2643 | SHJG_2640 | Putative aldehyde dehydrogenase. | Reductase. | 0.746 |
SHJG_2643 | SHJG_2642 | SHJG_2643 | SHJG_2642 | Putative aldehyde dehydrogenase. | MutT-like protein. | 0.782 |
SHJG_2643 | lig | SHJG_2643 | SHJG_2641 | Putative aldehyde dehydrogenase. | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.782 |
SHJG_3117 | SHJG_6417 | SHJG_3117 | SHJG_6417 | DNA polymerase beta. | DNA ligase. | 0.469 |
SHJG_3117 | SHJG_7611 | SHJG_3117 | SHJG_7611 | DNA polymerase beta. | Hypothetical protein. | 0.505 |
SHJG_3117 | lig | SHJG_3117 | SHJG_2641 | DNA polymerase beta. | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.874 |
SHJG_3117 | polA | SHJG_3117 | SHJG_3476 | DNA polymerase beta. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.962 |
SHJG_6417 | SHJG_3117 | SHJG_6417 | SHJG_3117 | DNA ligase. | DNA polymerase beta. | 0.469 |
SHJG_6417 | SHJG_8689 | SHJG_6417 | SHJG_8689 | DNA ligase. | Putative Ku70/Ku80 protein. | 0.846 |
SHJG_6417 | ku | SHJG_6417 | SHJG_6418 | DNA ligase. | Ku70/Ku80 protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.986 |
SHJG_6417 | lig | SHJG_6417 | SHJG_2641 | DNA ligase. | ATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.889 |
SHJG_6417 | ligA | SHJG_6417 | SHJG_6586 | DNA ligase. | NAD-dependent DNA ligase LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.480 |
SHJG_7611 | SHJG_3117 | SHJG_7611 | SHJG_3117 | Hypothetical protein. | DNA polymerase beta. | 0.505 |
SHJG_7611 | SHJG_8689 | SHJG_7611 | SHJG_8689 | Hypothetical protein. | Putative Ku70/Ku80 protein. | 0.844 |
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