STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000334155_03729Unannotated protein. (210 aa)    
Predicted Functional Partners:
GCA_000334155_03483
Unannotated protein.
  
  
 0.743
GCA_000334155_03730
Unannotated protein.
       0.709
GCA_000334155_03732
Unannotated protein.
 
  
0.670
GCA_000334155_03731
Unannotated protein.
       0.648
GCA_000334155_02716
Unannotated protein.
  
 
 0.640
GCA_000334155_03653
Unannotated protein.
  
 
  0.640
GCA_000334155_03728
Unannotated protein.
       0.636
GCA_000334155_01318
Unannotated protein.
   
    0.564
GCA_000334155_00725
Unannotated protein.
    
  0.544
GCA_000334155_02455
Unannotated protein.
  
  
 0.490
Your Current Organism:
Bacillus ligniniphilus
NCBI taxonomy Id: 1134413
Other names: B. ligniniphilus, Bacillus ligniniphilus Zhu et al. 2014, Bacillus sp. L1(2012), DSM 26145, JCM 18543, strain L1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.