STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
myod1Myogenic factor. (275 aa)    
Predicted Functional Partners:
LOC108921499
Transcription factor E2-alpha-like isoform X1.
    
 0.758
TCF12
Transcription factor 12-like.
    
 0.758
TCF4
Transcription factor 4-like.
    
 0.758
tcf12
BHLH domain-containing protein.
    
 0.758
Z043_115546
Transcription factor E2-alpha-like.
    
 0.758
LOC108926053
Uncharacterized protein.
    
 
 0.635
EP300
E1A binding protein p300.
    
 
 0.635
Mef2b
MADS-box domain-containing protein.
    
 0.614
LOC108930416
MADS-box domain-containing protein.
    
 0.604
MEF2D
MADS-box domain-containing protein.
    
 0.604
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.