STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSFOP00015002415Polycystic kidney disease 1b. (3050 aa)    
Predicted Functional Partners:
Pkd2
Polycystin-2-like.
    
 0.861
Z043_105304
Polycystic kidney disease 2-like 1 protein-like.
    
 0.859
Z043_119781
Uncharacterized protein.
    
 0.777
exoc5
Exocyst complex component 5-like.
     
 0.600
Z043_112155
Coiled-coil domain-containing protein 25-like.
    
 
 0.523
exoc4
Sec8_exocyst domain-containing protein.
     
 0.523
sec63
Translocation protein SEC63-like.
    
 
 0.515
nphp1
Nephrocystin-1-like.
   
 
 0.505
Z043_112228
Tuberin-like.
   
  
 0.503
RHO
Rhodopsin.
     
 0.502
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.