STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxxc1CXXC-type zinc finger protein 1-like. (574 aa)    
Predicted Functional Partners:
ash2l
Set1/Ash2 histone methyltransferase complex subunit ASH2-like.
   
 0.994
rbbp5
Retinoblastoma-binding protein 5-like.
    
 0.994
WDR82
WD repeat-containing protein 82-like.
   
 0.971
LOC108922553
Uncharacterized protein.
   
 0.925
LOC108934917
Histone-lysine N-methyltransferase SETD1B-like.
   
 0.925
SETD1B
[histone H3]-lysine4 N-trimethyltransferase SETD1.
   
 
 0.887
DPY30
Protein dpy-30-like.
    
 0.834
wdr5
WD repeat-containing protein 5-like.
   
 
 0.754
LOC108927192
WD repeat-containing protein 5.
   
 
 0.754
Z043_100895
Protein dpy-30-like.
    
 
 0.752
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.