STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl5bADP-ribosylation factor-like protein 5B-like; Belongs to the small GTPase superfamily. Arf family. (179 aa)    
Predicted Functional Partners:
LOC108924088
Intersectin-2-like.
    
 0.839
LOC108922646
Uncharacterized protein.
    
 0.839
LOC108937794
Coatomer subunit gamma-2-like.
    
 0.785
gbf1
SEC7 domain-containing protein.
    
 0.774
arfgap1
ADP-ribosylation factor GTPase-activating protein 1-like.
   
 0.759
ITSN1
Uncharacterized protein.
    
 0.750
ITSN1-2
Intersectin-1-like.
    
 0.750
ap1b1
AP complex subunit beta.
   
 0.688
ap2b1
AP-2 complex subunit beta-like.
   
 0.688
LOC108934714
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 0.684
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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