LOC108929779 protein (Scleropages formosus) - STRING interaction network

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

LOC108929779

Protein BTG1-like. (153 aa)

Predicted Functional Partners:

LOC108931092

0.769

cnot8

0.769

Z043_100828

0.702

cnot11

0.695

cnot10

0.692

CNOT3

0.586

LOC108931763

0.586

CNOT2

0.555

CNOT2-2

0.555

CNOT9

0.514

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT2	CNOT2-2	ENSSFOP00015058306	ENSSFOP00015073989	CCR4-NOT transcription complex subunit 2-like.	NOT2_3_5 domain-containing protein.	0.900
CNOT2	CNOT3	ENSSFOP00015058306	ENSSFOP00015000257	CCR4-NOT transcription complex subunit 2-like.	CCR4-NOT transcription complex subunit 3-like.	0.957
CNOT2	CNOT9	ENSSFOP00015058306	ENSSFOP00015012718	CCR4-NOT transcription complex subunit 2-like.	Cell differentiation protein RCD1-like.	0.956
CNOT2	LOC108929779	ENSSFOP00015058306	ENSSFOP00015003474	CCR4-NOT transcription complex subunit 2-like.	Protein BTG1-like.	0.555
CNOT2	LOC108931092	ENSSFOP00015058306	ENSSFOP00015020435	CCR4-NOT transcription complex subunit 2-like.	CCR4-NOT transcription complex subunit 7-like.	0.947
CNOT2	LOC108931763	ENSSFOP00015058306	ENSSFOP00015029896	CCR4-NOT transcription complex subunit 2-like.	Uncharacterized protein.	0.957
CNOT2	Z043_100828	ENSSFOP00015058306	ENSSFOP00015044949	CCR4-NOT transcription complex subunit 2-like.	CCR4-NOT transcription complex subunit 1-like.	0.979
CNOT2	cnot10	ENSSFOP00015058306	ENSSFOP00015039123	CCR4-NOT transcription complex subunit 2-like.	CCR4-NOT transcription complex subunit 10-like.	0.948
CNOT2	cnot11	ENSSFOP00015058306	ENSSFOP00015003366	CCR4-NOT transcription complex subunit 2-like.	Uncharacterized protein.	0.946
CNOT2	cnot8	ENSSFOP00015058306	ENSSFOP00015024043	CCR4-NOT transcription complex subunit 2-like.	CCR4-NOT transcription complex subunit 8-like.	0.947
CNOT2-2	CNOT2	ENSSFOP00015073989	ENSSFOP00015058306	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex subunit 2-like.	0.900
CNOT2-2	CNOT3	ENSSFOP00015073989	ENSSFOP00015000257	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex subunit 3-like.	0.957
CNOT2-2	CNOT9	ENSSFOP00015073989	ENSSFOP00015012718	NOT2_3_5 domain-containing protein.	Cell differentiation protein RCD1-like.	0.956
CNOT2-2	LOC108929779	ENSSFOP00015073989	ENSSFOP00015003474	NOT2_3_5 domain-containing protein.	Protein BTG1-like.	0.555
CNOT2-2	LOC108931092	ENSSFOP00015073989	ENSSFOP00015020435	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex subunit 7-like.	0.947
CNOT2-2	LOC108931763	ENSSFOP00015073989	ENSSFOP00015029896	NOT2_3_5 domain-containing protein.	Uncharacterized protein.	0.957
CNOT2-2	Z043_100828	ENSSFOP00015073989	ENSSFOP00015044949	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex subunit 1-like.	0.979
CNOT2-2	cnot10	ENSSFOP00015073989	ENSSFOP00015039123	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex subunit 10-like.	0.948
CNOT2-2	cnot11	ENSSFOP00015073989	ENSSFOP00015003366	NOT2_3_5 domain-containing protein.	Uncharacterized protein.	0.946
CNOT2-2	cnot8	ENSSFOP00015073989	ENSSFOP00015024043	NOT2_3_5 domain-containing protein.	CCR4-NOT transcription complex subunit 8-like.	0.947

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

40

average node degree:

7.27

avg. local clustering coefficient:

0.875

expected number of edges:

11

PPI enrichment p-value:

4.94e-12

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009252

Peptidoglycan biosynthetic process

8 of 38

1.96

4.42

8.65e-12

GO:0071555

Cell wall organization

4 of 26

1.83

2.07

2.98e-05

GO:0008360

Regulation of cell shape

4 of 26

1.83

2.07

2.98e-05

GO:0051301

Cell division

3 of 44

1.47

0.99

0.0063

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008955

Peptidoglycan glycosyltransferase activity

5 of 7

2.49

4.05

1.40e-08

GO:0008658

Penicillin binding

4 of 6

2.46

3.21

7.03e-07

GO:0009002

Serine-type D-Ala-D-Ala carboxypeptidase activity

3 of 5

2.42

2.34

3.71e-05

GO:0016757

Glycosyltransferase activity

6 of 61

1.63

2.33

7.03e-07

GO:0004180

Carboxypeptidase activity

4 of 19

1.96

2.32

1.32e-05

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1359

Mixed, incl. Peptidoglycan biosynthesis, and Cell division

11 of 46

2.02

6.54

2.68e-19

CL:1363

Mixed, incl. Peptidoglycan biosynthesis, and Cell division site

9 of 33

2.07

5.85

1.83e-15

CL:1416

Peptidoglycan glycosyltransferase activity, and Peptidoglycan muralytic activity

4 of 5

2.54

3.48

2.33e-07

CL:1365

Mixed, incl. Cell shape, and Cell division site

5 of 23

1.98

3.01

2.35e-07

CL:1398

Mixed, incl. Cell cycle protein, and Cell morphogenesis

2 of 5

2.24

1.07

0.0102

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00550

Peptidoglycan biosynthesis

6 of 33

1.9

3.33

1.15e-08

map01501

beta-Lactam resistance

4 of 121

1.16

0.79

0.0083

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0032153

Cell division site

3 of 9

2.16

1.68

0.00059

GOCC:0005618

Cell wall

3 of 21

1.79

1.26

0.0027

GOCC:0071944

Cell periphery

7 of 713

0.63

0.39

0.0319

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0961

Cell wall biogenesis/degradation

3 of 16

1.91

1.38

0.0018

KW-0133

Cell shape

3 of 16

1.91

1.38

0.0018

KW-0997

Cell inner membrane

3 of 42

1.49

0.94

0.0087

KW-0573

Peptidoglycan synthesis

2 of 15

1.76

0.87

0.0198

KW-0328

Glycosyltransferase

2 of 22

1.6

0.73

0.0348

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00905

Penicillin binding protein transpeptidase domain

4 of 6

2.46

2.98

2.11e-06

PF03717

Penicillin-binding Protein dimerisation domain

2 of 2

2.64

1.11

0.0097

PF01098

Cell cycle protein

2 of 2

2.64

1.11

0.0097

PF00912

Transglycosylase

2 of 4

2.34

1.04

0.0120

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR001460

Penicillin-binding protein, transpeptidase

4 of 6

2.46

2.92

2.73e-06

IPR012338

Beta-lactamase/transpeptidase-like

5 of 18

2.08

2.84

1.26e-06

IPR036138

Penicillin-binding protein, dimerisation domain superfamily

2 of 2

2.64

0.98

0.0167

IPR005311

Penicillin-binding protein, dimerisation domain

2 of 2

2.64

0.98

0.0167

IPR001182

Probable peptidoglycan glycosyltransferase FtsW/RodA

2 of 2

2.64

0.98

0.0167

(more ...)

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