STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrmdaLeucine-rich repeat-containing protein C10orf11-like. (233 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.944
sf3a3
Splicing factor 3A subunit 3-like.
   
 0.929
snrpg
Small nuclear ribonucleoprotein G.
   
 0.920
sf3b1
Splicing factor 3B subunit 1-like.
   
 0.918
Snrpf
Small nuclear ribonucleoprotein F-like.
   
 0.916
sf3b3
Splicing factor 3B subunit 3-like.
    
 0.913
sf3a1
Splicing factor 3a subunit 1.
   
 0.913
phf5a
PHD finger-like domain-containing protein 5A-like.
   
 0.910
sf3b2
PSP domain-containing protein.
   
 0.908
sf3b4
Splicing factor 3B subunit 4-like.
    
 0.905
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.