STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lman2Vesicular integral-membrane protein VIP36-like. (358 aa)    
Predicted Functional Partners:
bet1
Blocked early in transport 1.
   
 
 0.683
gosr2
Golgi SNAP receptor complex member 2-like.
   
 
 0.681
Lman1
Protein ERGIC-53-like.
    
0.669
sec13
Protein SEC13-like; Belongs to the WD repeat SEC13 family.
   
 0.657
Z043_105556
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.646
LOC108923848
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.646
LOC108924169
Circularly permutated Ras protein 1-like.
   
 0.636
LOC108936204
Transmembrane emp24 domain-containing protein 2 isoform X1.
   
 0.636
TMED2
Transmembrane emp24 domain-containing protein 2-like.
   
 0.636
scfd1
Sec1 family domain-containing protein 1-like; Belongs to the STXBP/unc-18/SEC1 family.
     
 0.626
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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