STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108926966E3 ubiquitin-protein ligase SMURF1-like. (756 aa)    
Predicted Functional Partners:
LOC114910717
Polyubiquitin-C.
    
 0.821
smad7
Mothers against decapentaplegic homolog 7 isoform X1.
    
 0.815
Z043_116676
MH2 domain-containing protein.
    
 0.815
uba52
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.812
smad6
MH1 domain-containing protein.
    
 0.812
Rps27a
Ubiquitin and ribosomal protein S27a-like protein-like.
    
 0.810
Z043_102951
26S proteasome non-ATPase regulatory subunit 4-like.
    
 0.745
smad5
Mothers against decapentaplegic homolog.
    
 0.725
smad2
Mothers against decapentaplegic homolog.
    
 0.718
smad3
Mothers against decapentaplegic homolog.
    
 0.718
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.