STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
helzPutative helicase with zinc finger domain. (1913 aa)    
Predicted Functional Partners:
Z043_102142
Roquin-2-like.
   
 
 0.696
Z043_100828
CCR4-NOT transcription complex subunit 1-like.
   
 
 0.692
smyd3
[histone H3]-lysine4/36 N-trimethyltransferase SMYD.
    
 0.638
phf3
PHD finger protein 3-like.
   
  
 0.633
Z043_122155
Epiphycan-like.
      
 0.575
piwil2
Piwi-like protein 2-like; Belongs to the argonaute family.
   
 0.543
piwil1
Piwi-like protein 1-like; Belongs to the argonaute family.
   
 0.543
LOC108922058
N-lysine methyltransferase SMYD2-like.
    
 0.524
gtf2e2
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
      
 0.505
ENSSFOP00015033111
Deformed epidermal autoregulatory factor 1 homolog isoform X1.
      
 0.483
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.