STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh6Alpha-ketoglutarate-dependent dioxygenase alkB6-like. (234 aa)    
Predicted Functional Partners:
LOC108942096
Mediator of RNA polymerase II transcription subunit 29-like.
    
 
 0.828
alkbh7
Alkylated DNA repair protein alkB7-like.
   
  
 0.703
alkbh4
Alpha-ketoglutarate-dependent dioxygenase alkB 4-like.
      
 0.588
alkbh1
Alkylated DNA repair protein alkB1-like.
   
  
 0.579
Rsu1
Ras suppressor protein 1-like.
      
 0.575
vps51
Vacuolar protein sorting-associated protein 51-like.
      
 0.568
jmjd4
JmjC domain-containing protein 4-like.
      
 0.553
Alkbh2
Fe2OG dioxygenase domain-containing protein.
      
 0.549
dhx30
Uncharacterized protein.
      
 0.459
med6
Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
 
 0.454
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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