STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmt12tRNA wybutosine-synthesizing protein 2-like. (417 aa)    
Predicted Functional Partners:
Trmt112
TRM112-like protein-like.
   
 
 0.953
tyw3
tRNA-yW synthesizing protein 3 homolog.
  
 
 0.758
tyw5
tRNA wybutosine-synthesizing protein 5-like.
 
    
 0.757
LOC108922478
Flavodoxin-like domain-containing protein.
   
 
 0.737
lcmt2
tRNA wybutosine-synthesizing protein 4-like.
   
  
 0.736
tsr3
Probable ribosome biogenesis protein Z043_104250; Probable pre-rRNA processing protein involved in ribosome biogenesis.
   
  
 0.691
trmt5
SAM_MT_TRM5_TYW2 domain-containing protein.
      
0.683
Bud23
Williams-Beuren syndrome chromosomal region 22 protein-like.
   
 
 0.585
wdr4
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
  
 0.579
lcmt1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
   
  
 0.570
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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