STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108941638DCN1-like protein. (305 aa)    
Predicted Functional Partners:
ube2f
NEDD8-conjugating enzyme UBE2F isoform X1.
    
 0.842
ube2m
NEDD8-conjugating enzyme Ubc12-like; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.842
LOC108935504
Cullin-1-like; Belongs to the cullin family.
   
 0.814
CUL1
Cullin-1-like; Belongs to the cullin family.
   
 0.814
cul3
Cullin-3-like; Belongs to the cullin family.
   
 0.799
Z043_107472
Rbx1 protein-like.
    
 0.771
LOC108939936
E3 ubiquitin-protein ligase RBX1-like.
    
 0.771
rbx1
Ring-box 1.
    
 0.771
cul2
Cullin-2-like; Belongs to the cullin family.
   
 0.762
LOC108937896
NEDD8.
    
 0.757
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.