STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mydgfUPF0556 protein C19orf10-like. (182 aa)    
Predicted Functional Partners:
Cope
Coatomer subunit epsilon-like.
   
  
 0.588
SSR4
Translocon-associated protein subunit delta-like.
   
  
 0.537
LOC108918347
Translocon-associated protein subunit delta-like.
   
  
 0.537
txndc11
Thioredoxin domain-containing protein 11-like.
   
  
 0.497
Slc35b1
Solute carrier family 35 member B1-like.
   
    0.454
mrpl4
39S ribosomal protein L4, mitochondrial-like.
      
 0.439
sacm1l
Phosphatidylinositide phosphatase SAC1-A-like.
      
 0.438
creld2
Uncharacterized protein.
   
  
 0.429
Z043_108251
Cysteine-rich with EGF-like domain protein 2-like.
   
  
 0.429
Z043_123377
X-box binding protein 1B-like.
   
 
  0.421
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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