asb10 protein (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

asb10

Ankyrin repeat and SOCS box protein 10-like. (464 aa)

Predicted Functional Partners:

ift81

0.550

LOC108923979

0.497

Nfkbia

0.496

rfxank

0.491

ift88

0.484

asb1

0.483

ift52

0.480

Z043_122969

0.479

ENSSFOP00015019474

0.478

ift22

0.477

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFOP00015019474	Z043_122969	ENSSFOP00015019474	ENSSFOP00015019917	Neurogenic locus notch homolog protein 2-like.	Ankyrin repeat and SOCS box protein 12-like.	0.447
ENSSFOP00015019474	asb1	ENSSFOP00015019474	ENSSFOP00015025728	Neurogenic locus notch homolog protein 2-like.	Ankyrin repeat and SOCS box protein 1-like.	0.519
ENSSFOP00015019474	asb10	ENSSFOP00015019474	ENSSFOP00015014018	Neurogenic locus notch homolog protein 2-like.	Ankyrin repeat and SOCS box protein 10-like.	0.478
ENSSFOP00015019474	rfxank	ENSSFOP00015019474	ENSSFOP00015008568	Neurogenic locus notch homolog protein 2-like.	DNA-binding protein RFXANK-like.	0.548
LOC108923979	Nfkbia	ENSSFOP00015006478	ENSSFOP00015018792	IkappaBalpha2-like.	NF-kappa-B inhibitor alpha-like.	0.901
LOC108923979	Z043_122969	ENSSFOP00015006478	ENSSFOP00015019917	IkappaBalpha2-like.	Ankyrin repeat and SOCS box protein 12-like.	0.491
LOC108923979	asb1	ENSSFOP00015006478	ENSSFOP00015025728	IkappaBalpha2-like.	Ankyrin repeat and SOCS box protein 1-like.	0.519
LOC108923979	asb10	ENSSFOP00015006478	ENSSFOP00015014018	IkappaBalpha2-like.	Ankyrin repeat and SOCS box protein 10-like.	0.497
LOC108923979	ift22	ENSSFOP00015006478	ENSSFOP00015004008	IkappaBalpha2-like.	Rab-like protein 5-like.	0.477
LOC108923979	ift52	ENSSFOP00015006478	ENSSFOP00015042461	IkappaBalpha2-like.	Intraflagellar transport 52.	0.480
LOC108923979	ift81	ENSSFOP00015006478	ENSSFOP00015010366	IkappaBalpha2-like.	IFT81_CH domain-containing protein.	0.550
LOC108923979	ift88	ENSSFOP00015006478	ENSSFOP00015042966	IkappaBalpha2-like.	Intraflagellar transport protein 88 homolog isoform X2.	0.484
LOC108923979	rfxank	ENSSFOP00015006478	ENSSFOP00015008568	IkappaBalpha2-like.	DNA-binding protein RFXANK-like.	0.513
Nfkbia	LOC108923979	ENSSFOP00015018792	ENSSFOP00015006478	NF-kappa-B inhibitor alpha-like.	IkappaBalpha2-like.	0.901
Nfkbia	Z043_122969	ENSSFOP00015018792	ENSSFOP00015019917	NF-kappa-B inhibitor alpha-like.	Ankyrin repeat and SOCS box protein 12-like.	0.471
Nfkbia	asb1	ENSSFOP00015018792	ENSSFOP00015025728	NF-kappa-B inhibitor alpha-like.	Ankyrin repeat and SOCS box protein 1-like.	0.503
Nfkbia	asb10	ENSSFOP00015018792	ENSSFOP00015014018	NF-kappa-B inhibitor alpha-like.	Ankyrin repeat and SOCS box protein 10-like.	0.496
Nfkbia	ift22	ENSSFOP00015018792	ENSSFOP00015004008	NF-kappa-B inhibitor alpha-like.	Rab-like protein 5-like.	0.477
Nfkbia	ift52	ENSSFOP00015018792	ENSSFOP00015042461	NF-kappa-B inhibitor alpha-like.	Intraflagellar transport 52.	0.480
Nfkbia	ift81	ENSSFOP00015018792	ENSSFOP00015010366	NF-kappa-B inhibitor alpha-like.	IFT81_CH domain-containing protein.	0.550