rasef protein (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rasef

Ras and EF-hand domain-containing protein-like. (702 aa)

Predicted Functional Partners:

Z043_125400

0.624

rab3ip

0.624

exoc4

0.587

LOC108934451

0.585

exoc7

0.579

exoc2

0.579

rabggtb

0.559

exoc5

0.550

Z043_101528

0.535

exoc6b

0.535

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108934451	Z043_125400	ENSSFOP00015041064	ENSSFOP00015016771	Uncharacterized protein.	Sec2p domain-containing protein.	0.525
LOC108934451	rab3ip	ENSSFOP00015041064	ENSSFOP00015077199	Uncharacterized protein.	Uncharacterized protein.	0.525
LOC108934451	rabggtb	ENSSFOP00015041064	ENSSFOP00015045275	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.967
LOC108934451	rasef	ENSSFOP00015041064	ENSSFOP00015014022	Uncharacterized protein.	Ras and EF-hand domain-containing protein-like.	0.585
Z043_101528	Z043_125400	ENSSFOP00015043826	ENSSFOP00015016771	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec2p domain-containing protein.	0.844
Z043_101528	exoc2	ENSSFOP00015043826	ENSSFOP00015021481	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.978
Z043_101528	exoc4	ENSSFOP00015043826	ENSSFOP00015037557	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec8_exocyst domain-containing protein.	0.978
Z043_101528	exoc5	ENSSFOP00015043826	ENSSFOP00015027192	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 5-like.	0.978
Z043_101528	exoc7	ENSSFOP00015043826	ENSSFOP00015007123	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.978
Z043_101528	rab3ip	ENSSFOP00015043826	ENSSFOP00015077199	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Uncharacterized protein.	0.844
Z043_101528	rasef	ENSSFOP00015043826	ENSSFOP00015014022	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Ras and EF-hand domain-containing protein-like.	0.535
Z043_125400	LOC108934451	ENSSFOP00015016771	ENSSFOP00015041064	Sec2p domain-containing protein.	Uncharacterized protein.	0.525
Z043_125400	Z043_101528	ENSSFOP00015016771	ENSSFOP00015043826	Sec2p domain-containing protein.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.844
Z043_125400	exoc2	ENSSFOP00015016771	ENSSFOP00015021481	Sec2p domain-containing protein.	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.806
Z043_125400	exoc4	ENSSFOP00015016771	ENSSFOP00015037557	Sec2p domain-containing protein.	Sec8_exocyst domain-containing protein.	0.817
Z043_125400	exoc5	ENSSFOP00015016771	ENSSFOP00015027192	Sec2p domain-containing protein.	Exocyst complex component 5-like.	0.847
Z043_125400	exoc6b	ENSSFOP00015016771	ENSSFOP00015048350	Sec2p domain-containing protein.	Uncharacterized protein.	0.844
Z043_125400	exoc7	ENSSFOP00015016771	ENSSFOP00015007123	Sec2p domain-containing protein.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.760
Z043_125400	rasef	ENSSFOP00015016771	ENSSFOP00015014022	Sec2p domain-containing protein.	Ras and EF-hand domain-containing protein-like.	0.624
exoc2	Z043_101528	ENSSFOP00015021481	ENSSFOP00015043826	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.978