LOC108922092 protein (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108922092

Uncharacterized protein LOC108922092 isoform X1. (480 aa)

Predicted Functional Partners:

ENSSFOP00015006367

0.783

HGFAC

0.783

HABP2

0.783

LOC108925794

0.751

LOC108942640

0.751

lrit1

0.751

LOC108938748

0.751

LOC108923905

0.717

ntf3

0.717

Z043_107024

0.684

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFOP00015006367	LOC108922092	ENSSFOP00015006367	ENSSFOP00015021335	annotation not available	Uncharacterized protein LOC108922092 isoform X1.	0.783
ENSSFOP00015006367	LOC108925794	ENSSFOP00015006367	ENSSFOP00015009999	annotation not available	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.700
ENSSFOP00015006367	LOC108938748	ENSSFOP00015006367	ENSSFOP00015039645	annotation not available	Ig-like domain-containing protein.	0.700
ENSSFOP00015006367	LOC108942640	ENSSFOP00015006367	ENSSFOP00015020365	annotation not available	Uncharacterized protein.	0.700
ENSSFOP00015006367	Z043_107024	ENSSFOP00015006367	ENSSFOP00015022818	annotation not available	P53-induced protein with a death domain-like.	0.689
ENSSFOP00015006367	lrit1	ENSSFOP00015006367	ENSSFOP00015021073	annotation not available	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.700
HABP2	HGFAC	ENSSFOP00015034233	ENSSFOP00015020042	Hyaluronan-binding protein 2-like.	Hepatocyte growth factor activator-like.	0.506
HABP2	LOC108922092	ENSSFOP00015034233	ENSSFOP00015021335	Hyaluronan-binding protein 2-like.	Uncharacterized protein LOC108922092 isoform X1.	0.783
HABP2	LOC108925794	ENSSFOP00015034233	ENSSFOP00015009999	Hyaluronan-binding protein 2-like.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.700
HABP2	LOC108938748	ENSSFOP00015034233	ENSSFOP00015039645	Hyaluronan-binding protein 2-like.	Ig-like domain-containing protein.	0.700
HABP2	LOC108942640	ENSSFOP00015034233	ENSSFOP00015020365	Hyaluronan-binding protein 2-like.	Uncharacterized protein.	0.700
HABP2	Z043_107024	ENSSFOP00015034233	ENSSFOP00015022818	Hyaluronan-binding protein 2-like.	P53-induced protein with a death domain-like.	0.689
HABP2	lrit1	ENSSFOP00015034233	ENSSFOP00015021073	Hyaluronan-binding protein 2-like.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.700
HGFAC	HABP2	ENSSFOP00015020042	ENSSFOP00015034233	Hepatocyte growth factor activator-like.	Hyaluronan-binding protein 2-like.	0.506
HGFAC	LOC108922092	ENSSFOP00015020042	ENSSFOP00015021335	Hepatocyte growth factor activator-like.	Uncharacterized protein LOC108922092 isoform X1.	0.783
HGFAC	LOC108925794	ENSSFOP00015020042	ENSSFOP00015009999	Hepatocyte growth factor activator-like.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.700
HGFAC	LOC108938748	ENSSFOP00015020042	ENSSFOP00015039645	Hepatocyte growth factor activator-like.	Ig-like domain-containing protein.	0.700
HGFAC	LOC108942640	ENSSFOP00015020042	ENSSFOP00015020365	Hepatocyte growth factor activator-like.	Uncharacterized protein.	0.700
HGFAC	Z043_107024	ENSSFOP00015020042	ENSSFOP00015022818	Hepatocyte growth factor activator-like.	P53-induced protein with a death domain-like.	0.689
HGFAC	lrit1	ENSSFOP00015020042	ENSSFOP00015021073	Hepatocyte growth factor activator-like.	Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1.	0.700