STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108936647Caspase-6-like. (317 aa)    
Predicted Functional Partners:
casp9
Caspase-9-like; Belongs to the peptidase C14A family.
    
0.968
LOC108932283
Uncharacterized protein; Belongs to the peptidase C14A family.
  
0.952
LOC108918555
Caspase 8-like; Belongs to the peptidase C14A family.
  
0.951
LOC108920617
Caspase-8-like isoform X1.
  
0.949
LOC108918550
Caspase-8-like.
   
0.947
Casp8
Caspase-8-like; Belongs to the peptidase C14A family.
   
0.947
Lmna
Lamin-A-like; Belongs to the intermediate filament family.
   
 0.946
LOC108930524
Lamin-B2-like; Belongs to the intermediate filament family.
   
 0.946
LMNA
IF rod domain-containing protein; Belongs to the intermediate filament family.
   
 0.946
lmnb1
Lamin-B1-like; Belongs to the intermediate filament family.
   
 0.946
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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