STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ttc1Tetratricopeptide repeat protein 1-like. (364 aa)    
Predicted Functional Partners:
Ppp1r7
Uncharacterized protein.
   
    0.624
tomm70
Mitochondrial import receptor subunit TOM70-like.
      
0.571
Z043_103983
Heat shock 70 kDa protein 4-like.
    
 
 0.541
HSPA4
Heat shock 70 kDa protein 4-like.
    
 
 0.541
RNF41
E3 ubiquitin-protein ligase NRDP1-like.
    
   0.525
LOC108939086
E3 ubiquitin-protein ligase NRDP1-like.
    
   0.525
exoc5
Exocyst complex component 5-like.
      
 0.437
slu7
Pre-mRNA-splicing factor SLU7-like.
   
  
 0.434
Z043_123393
Uncharacterized protein.
      
0.422
LOC108927551
Vesicle-associated membrane protein-associated protein A-like.
    
 
 0.408
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.