STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNIP1Smad nuclear interacting protein 1-like. (368 aa)    
Predicted Functional Partners:
Z043_104223
RRM domain-containing protein.
   
 0.997
Bud13
BUD13 protein-like.
   
 0.989
snrnp200
U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
   
 
 0.982
snw1
SNW domain-containing protein 1-like.
    
 
 0.974
sf3b1
Splicing factor 3B subunit 1-like.
    
 
 0.955
phf5a
PHD finger-like domain-containing protein 5A-like.
    
 
 0.940
sf3a3
Splicing factor 3A subunit 3-like.
   
 
 0.927
rnf113a
RING finger protein 113A-like.
   
 
 0.925
cwc27
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.918
sf3a1
Splicing factor 3a subunit 1.
    
 
 0.915
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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