STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108920932Cat eye syndrome critical region protein 5-like. (439 aa)    
Predicted Functional Partners:
Tmem121b
Cat eye syndrome critical region protein 6-like.
 
    
 0.525
isy1
Pre-mRNA-splicing factor ISY1-like.
 
    
 0.443
h6pd
Uncharacterized protein.
  
 
 0.428
Tceanc2
Transcription elongation factor A N-terminal and central domain-containing protein 2-like.
      
 0.416
Psat1
Phosphoserine aminotransferase-like.
  
 
 0.412
Shmt1
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
     
 0.405
shmt2
Serine hydroxymethyltransferase, mitochondrial-like.
     
 0.405
LOC108942427
Uncharacterized protein.
      
 0.400
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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