STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp16Ubiquitin carboxyl-terminal hydrolase. (840 aa)    
Predicted Functional Partners:
LOC114910717
Polyubiquitin-C.
    
 0.745
Rps27a
Ubiquitin and ribosomal protein S27a-like protein-like.
    
 0.638
Mysm1
Histone H2A deubiquitinase MYSM1 isoform X1.
   
  
 0.612
mysm1
Histone H2A deubiquitinase MYSM1-like.
   
  
 0.612
psme2
Proteasome activator subunit 2 (PA28 beta).
      
 0.571
ercc1
DNA excision repair protein ERCC-1-like.
    
 0.548
ubl4a
Ubiquitin-like protein 4A-like.
    
 0.512
Usp39
U4/U6.U5 tri-snRNP-associated protein 2-like.
      
 0.506
otud6b
OTU domain-containing protein 6B-like.
   
  
 0.482
Z043_124994
USP domain-containing protein.
   
 
0.479
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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