pdzrn3 protein (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pdzrn3

E3 ubiquitin-protein ligase PDZRN3-like. (1048 aa)

Predicted Functional Partners:

birc6

0.784

mib2

0.727

Rps27a

0.719

Z043_102720

0.706

uba52

0.686

ripk4

0.644

Z043_110793

0.644

LOC108930640

0.644

Tradd

0.624

ecsit

0.579

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108930640	Rps27a	ENSSFOP00015064428	ENSSFOP00015027614	Receptor-interacting serine/threonine-protein kinase 4-like.	Ubiquitin and ribosomal protein S27a-like protein-like.	0.755
LOC108930640	Tradd	ENSSFOP00015064428	ENSSFOP00015021514	Receptor-interacting serine/threonine-protein kinase 4-like.	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	0.972
LOC108930640	Z043_102720	ENSSFOP00015064428	ENSSFOP00015048712	Receptor-interacting serine/threonine-protein kinase 4-like.	Ubiquitin-conjugating enzyme E2 variant 1-like.	0.926
LOC108930640	Z043_110793	ENSSFOP00015064428	ENSSFOP00015035142	Receptor-interacting serine/threonine-protein kinase 4-like.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.500
LOC108930640	birc6	ENSSFOP00015064428	ENSSFOP00015038083	Receptor-interacting serine/threonine-protein kinase 4-like.	Baculoviral IAP repeat-containing protein 6-like.	0.847
LOC108930640	mib2	ENSSFOP00015064428	ENSSFOP00015019260	Receptor-interacting serine/threonine-protein kinase 4-like.	Uncharacterized protein.	0.791
LOC108930640	pdzrn3	ENSSFOP00015064428	ENSSFOP00015038741	Receptor-interacting serine/threonine-protein kinase 4-like.	E3 ubiquitin-protein ligase PDZRN3-like.	0.644
LOC108930640	ripk4	ENSSFOP00015064428	ENSSFOP00015021821	Receptor-interacting serine/threonine-protein kinase 4-like.	Receptor-interacting serine/threonine-protein kinase 4-like.	0.494
LOC108930640	uba52	ENSSFOP00015064428	ENSSFOP00015033218	Receptor-interacting serine/threonine-protein kinase 4-like.	Ubiquitin-large subunit ribosomal protein L40e.	0.761
Rps27a	LOC108930640	ENSSFOP00015027614	ENSSFOP00015064428	Ubiquitin and ribosomal protein S27a-like protein-like.	Receptor-interacting serine/threonine-protein kinase 4-like.	0.755
Rps27a	Tradd	ENSSFOP00015027614	ENSSFOP00015021514	Ubiquitin and ribosomal protein S27a-like protein-like.	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	0.629
Rps27a	Z043_102720	ENSSFOP00015027614	ENSSFOP00015048712	Ubiquitin and ribosomal protein S27a-like protein-like.	Ubiquitin-conjugating enzyme E2 variant 1-like.	0.999
Rps27a	Z043_110793	ENSSFOP00015027614	ENSSFOP00015035142	Ubiquitin and ribosomal protein S27a-like protein-like.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.755
Rps27a	birc6	ENSSFOP00015027614	ENSSFOP00015038083	Ubiquitin and ribosomal protein S27a-like protein-like.	Baculoviral IAP repeat-containing protein 6-like.	0.970
Rps27a	mib2	ENSSFOP00015027614	ENSSFOP00015019260	Ubiquitin and ribosomal protein S27a-like protein-like.	Uncharacterized protein.	0.987
Rps27a	pdzrn3	ENSSFOP00015027614	ENSSFOP00015038741	Ubiquitin and ribosomal protein S27a-like protein-like.	E3 ubiquitin-protein ligase PDZRN3-like.	0.719
Rps27a	ripk4	ENSSFOP00015027614	ENSSFOP00015021821	Ubiquitin and ribosomal protein S27a-like protein-like.	Receptor-interacting serine/threonine-protein kinase 4-like.	0.755
Rps27a	uba52	ENSSFOP00015027614	ENSSFOP00015033218	Ubiquitin and ribosomal protein S27a-like protein-like.	Ubiquitin-large subunit ribosomal protein L40e.	0.999
Tradd	LOC108930640	ENSSFOP00015021514	ENSSFOP00015064428	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Receptor-interacting serine/threonine-protein kinase 4-like.	0.972
Tradd	Rps27a	ENSSFOP00015021514	ENSSFOP00015027614	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Ubiquitin and ribosomal protein S27a-like protein-like.	0.629