LOC108933574 protein (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108933574

Stress-induced-phosphoprotein 1-like. (509 aa)

Predicted Functional Partners:

LOC108930839

0.648

fau

0.648

LOC108921603

0.626

NCBP1

0.624

LOC108923558

0.584

sf3b1

0.558

snrpe

0.552

snrpg

0.548

eif2s3

0.536

Snrpf

0.536

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108921603	LOC108923558	ENSSFOP00015023304	ENSSFOP00015005927	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	ATP-dependent RNA helicase DQX1-like.	0.634
LOC108921603	LOC108933574	ENSSFOP00015023304	ENSSFOP00015053116	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Stress-induced-phosphoprotein 1-like.	0.626
LOC108921603	NCBP1	ENSSFOP00015023304	ENSSFOP00015045775	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Nuclear cap-binding protein subunit 1-like.	0.999
LOC108921603	Snrpf	ENSSFOP00015023304	ENSSFOP00015033721	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Small nuclear ribonucleoprotein F-like.	0.991
LOC108921603	sf3b1	ENSSFOP00015023304	ENSSFOP00015033786	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Splicing factor 3B subunit 1-like.	0.948
LOC108921603	snrpe	ENSSFOP00015023304	ENSSFOP00015002206	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.996
LOC108921603	snrpg	ENSSFOP00015023304	ENSSFOP00015029625	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Small nuclear ribonucleoprotein G.	0.994
LOC108923558	LOC108921603	ENSSFOP00015005927	ENSSFOP00015023304	ATP-dependent RNA helicase DQX1-like.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.634
LOC108923558	LOC108933574	ENSSFOP00015005927	ENSSFOP00015053116	ATP-dependent RNA helicase DQX1-like.	Stress-induced-phosphoprotein 1-like.	0.584
LOC108923558	NCBP1	ENSSFOP00015005927	ENSSFOP00015045775	ATP-dependent RNA helicase DQX1-like.	Nuclear cap-binding protein subunit 1-like.	0.574
LOC108923558	Snrpf	ENSSFOP00015005927	ENSSFOP00015033721	ATP-dependent RNA helicase DQX1-like.	Small nuclear ribonucleoprotein F-like.	0.880
LOC108923558	sf3b1	ENSSFOP00015005927	ENSSFOP00015033786	ATP-dependent RNA helicase DQX1-like.	Splicing factor 3B subunit 1-like.	0.833
LOC108923558	snrpe	ENSSFOP00015005927	ENSSFOP00015002206	ATP-dependent RNA helicase DQX1-like.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.878
LOC108923558	snrpg	ENSSFOP00015005927	ENSSFOP00015029625	ATP-dependent RNA helicase DQX1-like.	Small nuclear ribonucleoprotein G.	0.852
LOC108930839	LOC108933574	ENSSFOP00015001178	ENSSFOP00015053116	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Stress-induced-phosphoprotein 1-like.	0.648
LOC108930839	Snrpf	ENSSFOP00015001178	ENSSFOP00015033721	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Small nuclear ribonucleoprotein F-like.	0.433
LOC108930839	eif2s3	ENSSFOP00015001178	ENSSFOP00015026329	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Eukaryotic translation initiation factor 2 subunit 3-like.	0.999
LOC108930839	fau	ENSSFOP00015001178	ENSSFOP00015030671	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
LOC108930839	snrpg	ENSSFOP00015001178	ENSSFOP00015029625	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Small nuclear ribonucleoprotein G.	0.563
LOC108933574	LOC108921603	ENSSFOP00015053116	ENSSFOP00015023304	Stress-induced-phosphoprotein 1-like.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.626