STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps45Vacuolar protein sorting-associated protein 45-like; Belongs to the STXBP/unc-18/SEC1 family. (580 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn-5-like.
    
 0.998
stx16
Syntaxin-16-like; Belongs to the syntaxin family.
    
 
 0.991
vti1a
Vesicle transport through interaction with t-SNAREs homolog 1A isoform X3.
   
 
 0.944
ergic3
Endoplasmic reticulum-Golgi intermediate compartment protein 3-like.
 
      0.900
Mto1
Protein MTO1, mitochondrial-like.
 
      0.900
vps18
Vacuolar protein sorting-associated protein 18-like.
    
 0.890
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
    
 0.885
stx10
Syntaxin-10-like.
    
 
 0.883
stx6
Syntaxin-6-like; Belongs to the syntaxin family.
    
 
 0.883
vps16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
   
 0.857
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.