drg1 protein (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

drg1

OBG-type G domain-containing protein. (381 aa)

Predicted Functional Partners:

zc3h15

0.995

ENSSFOP00015017236

0.904

RWDD1

0.904

Rpl23a

0.847

Rplp0

0.842

Rwdd4

0.835

rps3

0.833

pole2

0.831

c14hxorf56

0.821

c7h15orf40

0.821

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFOP00015017236	drg1	ENSSFOP00015017236	ENSSFOP00015061871	RWD domain containing 1.	OBG-type G domain-containing protein.	0.904
ENSSFOP00015017236	zc3h15	ENSSFOP00015017236	ENSSFOP00015003552	RWD domain containing 1.	Zinc finger CCCH domain-containing protein 15-like.	0.688
RWDD1	drg1	ENSSFOP00015073504	ENSSFOP00015061871	RWD domain-containing protein 1-like.	OBG-type G domain-containing protein.	0.904
RWDD1	zc3h15	ENSSFOP00015073504	ENSSFOP00015003552	RWD domain-containing protein 1-like.	Zinc finger CCCH domain-containing protein 15-like.	0.688
Rpl23a	Rplp0	ENSSFOP00015007835	ENSSFOP00015022953	60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
Rpl23a	drg1	ENSSFOP00015007835	ENSSFOP00015061871	60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family.	OBG-type G domain-containing protein.	0.847
Rpl23a	rps3	ENSSFOP00015007835	ENSSFOP00015003518	60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein s3-like; Belongs to the universal ribosomal protein uS3 family.	0.999
Rpl23a	zc3h15	ENSSFOP00015007835	ENSSFOP00015003552	60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family.	Zinc finger CCCH domain-containing protein 15-like.	0.847
Rplp0	Rpl23a	ENSSFOP00015022953	ENSSFOP00015007835	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	60S ribosomal protein L23a-like; Belongs to the universal ribosomal protein uL23 family.	0.999
Rplp0	drg1	ENSSFOP00015022953	ENSSFOP00015061871	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	OBG-type G domain-containing protein.	0.842
Rplp0	rps3	ENSSFOP00015022953	ENSSFOP00015003518	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	40S ribosomal protein s3-like; Belongs to the universal ribosomal protein uS3 family.	0.999
Rplp0	zc3h15	ENSSFOP00015022953	ENSSFOP00015003552	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Zinc finger CCCH domain-containing protein 15-like.	0.758
Rwdd4	drg1	ENSSFOP00015025406	ENSSFOP00015061871	RWD domain-containing protein 4.	OBG-type G domain-containing protein.	0.835
Rwdd4	zc3h15	ENSSFOP00015025406	ENSSFOP00015003552	RWD domain-containing protein 4.	Zinc finger CCCH domain-containing protein 15-like.	0.600
c14hxorf56	drg1	ENSSFOP00015012849	ENSSFOP00015061871	UPF0428 protein CXorf56-like.	OBG-type G domain-containing protein.	0.821
c14hxorf56	pole2	ENSSFOP00015012849	ENSSFOP00015057185	UPF0428 protein CXorf56-like.	DNA polymerase epsilon subunit 2-like.	0.821
c7h15orf40	drg1	ENSSFOP00015052969	ENSSFOP00015061871	UPF0235 protein C15orf40-like.	OBG-type G domain-containing protein.	0.821
c7h15orf40	pole2	ENSSFOP00015052969	ENSSFOP00015057185	UPF0235 protein C15orf40-like.	DNA polymerase epsilon subunit 2-like.	0.821
drg1	ENSSFOP00015017236	ENSSFOP00015061871	ENSSFOP00015017236	OBG-type G domain-containing protein.	RWD domain containing 1.	0.904
drg1	RWDD1	ENSSFOP00015061871	ENSSFOP00015073504	OBG-type G domain-containing protein.	RWD domain-containing protein 1-like.	0.904